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Posts on Jan 1970

U27-E02. Open source software

Open source software:

  • HTCondor 9.0 (HTC) job scheduler
  • Python 3.*
  • Python 2.7.18 (python2)
  • GCC/G++ 7/8/9
  • CMake 3.16.3
  • R version 4.2.0
  • OpenFoam
  • LAMMPS
  • LIGGGHTS
  • spparks
  • tetgen(1.6)
  • ovito-2.9 (/home/software/bin/ovito-2.9)
  • paraview
  • sox y libsox-fmt-all
  • ffmpeg
  • mpich
  • git

* possibility of adding any other software compatible with Linux-type systems

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U27-E01. Hermes cluster

Hermes Cluster: The cluster is unit 27 of NANBIOSIS, HERMES has more than 3260 cores and 5920 parallel processing threads, 26TB of RAM, 264TB nvme and 400TB HDD of shared storage, all connected by a 100Gbps backbone network. In addition, we currently have 251,392 cuda cores, 720GB graphics memory, 1,179.42 peak FP16 TFLOPS, and 828.6 peak FP32 TFLOPS. HERMES is capable of processing a year’s worth of work on a personal computer in just 3 hours, greatly accelerating the work of researchers. Technical staff maintain the system and offer technical support, advice on parallel and high-performance supercomputing.

Highlighted figures:

  • +3,260 Cores
  • +5920 Threads
  • 26TB RAM
  • 264TB NVMe
  • 400TB HDD
  • 100 Gbps backbone
  • 251,392 CUDA cores
  • 720 GB Graphics memory
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U25-E10. Animal housing

Animal housing room and animal preparation area equipped with a vital constants monitoring system, 2 full sets of anesthesia equipment, water bath, infrared lamp, injection pump, etc.

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U25-E11. Software packages

Software packages for data acquisition and processing:

  • Paravision, Topspin and Amix.
  • Users will have access to the database of spectra of diffe¬rent substances for metabolomics through this ac¬cess http://sermn. uab.cat/wiki/doku.php?id=bbiorefcode. This database is installed in a SeRMN computer, fully accessible to facility users.
  • The AMIX software page (http://www.bruker-biospin.com/amix. html) contains more information about its different applications: analysis of mixtures, metabolomic stu-dies, etc.
  • Other packages include the INTERPRET decision-support system for human brain tumour diagnosis based on MRS and SpectraClassifier, for pattern recognition of in vivo MRS data single and multivoxel are developed and distributed through the platform (http://gabrmn.uab.es).
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U25-S01. NMR spectrometer 250MHZ robot/250MHZ auto/360MHZ/400MHZ (Onsite&Remote) OUTSTANDING

NMR experiments in high-resolution 1D and 2D structural characterization of molecules chemical origin (http://sct.uab.cat/sermn/en/content/chemical-structure)

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U25-S02. NMR spectrometer 500MHz/600MHz (Onsite&Remote) OUTSTANDING

NMR experiments in high-resolution 1D and 2D structural characterization of molecules chemical origin (http://sct.uab.cat/sermn/en/content/chemical-structure)

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U25-S03. NMR spectrometer 400 MHz with HRMAS/CPMAS probes (Onsite&Remote) OUTSTANDING

HRMAS (High Resolution Magic Angle Spinning) allows to perform high resolution NMR experiments at samples which are in an intermediate state between liquid and solid, so viscous or heterogeneous samples. (http://sct.uab.cat/sermn/en/content/hrmas)

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U25-S04. 500 MHz spectrometer HPLC-NMR(Onsite&Remote) OUTSTANDING

The technique HPLC-DAD-(SPE) -NMR/MS is suitable for the analysis of mixtures. Combining high-resolution liquid chromatography with detection techniques NMR spectroscopy, mass spectrometry (MS) and diode array detection (DAD). (http://sct.uab.cat/sermn/en/content/complex-mixtures)

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U25-S05. Preclinical horizontal spectrometer Biospec 7T (Onsite&Remote) OUTSTANDING

Non-invasive manner to record high-resolution MRI images, and do spectroscopy focused on biological samples, small animals or plants, and other materials (http://sct.uab.cat/sermn/en/content/magnetic-resonance-imaging-mri)

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U25-S06. Dynamic nuclear polarizer HyperSense® (Onsite&Remote) OUTSTANDING

Hyperpolarization of samples allows to work with highly polarized nuclear spins in solution, afording a considerable sensitivity gain (http://sct.uab.cat/sermn/en/content/dnp-0)

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