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U27. High Performance Computing,

U27. High Performance Computing,

U27-S06. Mass storage (Onsite&Remote)

Mass storage.

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U27-S05. Massive parallel processing (Onsite&Remote)

Massive parallel processing.

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U27-S01. Remote access to HPC (On-site&Remote)

Remote access to the platform enables calculation
intensive numerical models to be run for use in applications
including:
>> Biomedical Engineering aplications with large data processing requirement
>> Bio-Informatics and Computational Chemistry
>> Scientific modeling
>> Computational Fluid Dynamics
>> Computer Vision and MATLAB Acceleration
>> Image processing.

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U27-S02. Software installation on demand (Onsite&Remote) OUTSTANDING

Installation of specific software on demand for research purposes.

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U27-S03. Biomedical signals processing, especially in cardiology (Onsite&Remote) OUTSTANDING

Automatization over ECG, polisomnography and other signals. Autonomic nervous system (VRV, BP, HRT, etc.) Characterization time-frecuency of biomedical signals. Outpatient detection of apnea. Characterization of cardiac risk through ECG. ECG multilevel (cellular and surface) electric modelling.

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U27-S04. Modeling of the functional behaviour of tissues and organs (Onsite&Remote) OUTSTANDING

Modeling and simulation of the functional behavior of tissues and organs with application in the evaluation of pathologies and surgery, pre-operative planning and virtual surgery. The main fields of application are related to the musculoskeletal system, the cardiovascular system and other tissues such as trachea, eye or breast.

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U27-E03. Licensed software

Licensed software:

  • Matlab 202*
  • Abaqus2022
  • Ansys
  • Comsol60
  • Gaussian

* possibility of adding any other software compatible with Linux-type systems

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U27-E02. Open source software

Open source software:

  • HTCondor 9.0 (HTC) job scheduler
  • Python 3.*
  • Python 2.7.18 (python2)
  • GCC/G++ 7/8/9
  • CMake 3.16.3
  • R version 4.2.0
  • OpenFoam
  • LAMMPS
  • LIGGGHTS
  • spparks
  • tetgen(1.6)
  • ovito-2.9 (/home/software/bin/ovito-2.9)
  • paraview
  • sox y libsox-fmt-all
  • ffmpeg
  • mpich
  • git

* possibility of adding any other software compatible with Linux-type systems

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U27-E01. Hermes cluster

Hermes Cluster: The cluster is unit 27 of NANBIOSIS, HERMES has more than 3260 cores and 5920 parallel processing threads, 26TB of RAM, 264TB nvme and 400TB HDD of shared storage, all connected by a 100Gbps backbone network. In addition, we currently have 251,392 cuda cores, 720GB graphics memory, 1,179.42 peak FP16 TFLOPS, and 828.6 peak FP32 TFLOPS. HERMES is capable of processing a year’s worth of work on a personal computer in just 3 hours, greatly accelerating the work of researchers. Technical staff maintain the system and offer technical support, advice on parallel and high-performance supercomputing.

Highlighted figures:

  • +3,260 Cores
  • +5920 Threads
  • 26TB RAM
  • 264TB NVMe
  • 400TB HDD
  • 100 Gbps backbone
  • 251,392 CUDA cores
  • 720 GB Graphics memory
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