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Posts on Jan 1970

Atomic Force Microscopy (AFM): Principles, Modes, and Emerging Applications in Nanotechnology and Biomedicine

Discover how Atomic Force Microscopy (AFM) provides nanometric precision in imaging, mechanical analysis, and electrochemical characterization of surfaces. Explore real-world applications in nanotech, semiconductors, and biomedicine.

Introduction

Atomic Force Microscopy (AFM) is a cutting-edge surface characterization technique that enables researchers to explore surfaces with nanometer-scale precision. Unlike optical or electron microscopes, AFM uses a mechanical probe to scan and measure the surface topography, material properties, and interactions at the atomic level.

The versatility of AFM allows it to operate in various environments, including air, vacuum, and liquids. This makes it ideal for a wide range of applications, from materials science to biomedicine. It provides both qualitative imaging and quantitative analysis of topography, mechanical elasticity, electrical properties, and more.

As advanced as it is adaptable, AFM enables the development of new semiconductors, high-performance polymers, bio-compatible coatings, and real-time biological measurements at the molecular scale. With the integration of specialized modes and AI-driven software, the Bruker Dimension Icon-PT AFM, for example, brings even greater efficiency and precision to modern nanoscale research.

Understanding the fundamentals of AFM

Atomic Force Microscopy was invented in 1986 by Binnig, Quate, and Gerber. Its original design has since evolved into a family of techniques that share one common feature: the interaction between a sharp probe tip and a surface.

The basic components of an AFM system include:

  • Cantilever and Tip: A nanometer-scale tip mounted on a flexible cantilever that interacts with the sample.
  • Laser and Photodetector: A laser beam reflects off the back of the cantilever and onto a photodetector, tracking vertical displacement.
  • Piezoelectric Scanner: Controls the movement of the sample or the probe with sub-nanometer accuracy.
  • Feedback System: Maintains a constant force or height to allow precise mapping of the surface.

AFM does not rely on light or electrons to generate images. Instead, it uses force interactions, such as van der Waals, electrostatic, or capillary forces, to sense the features of the surface. This makes it especially suitable for non-conductive samples, unlike SEM or TEM.

Additionally, AFM can function in air, liquids, or controlled gas environments, enabling real-time biological and chemical analysis under near-physiological conditions. This environmental adaptability is a major advantage in biosanitary research.

AFM working modes explained

Atomic Force Microscopy offers multiple operational modes, each designed for specific material types and analytical goals.

Contact Mode

In contact mode, the probe remains in constant contact with the surface as it scans. This mode provides high-resolution imaging but can be invasive, especially for soft or biological samples. It is best suited for hard, stable surfaces such as metals, glass, and ceramics.

Tapping Mode (Intermittent contact)

Tapping mode oscillates the cantilever at its resonance frequency and gently touches the surface during each cycle. This reduces lateral forces and sample damage, making it ideal for imaging soft polymers, biological tissues, and loosely bound nanoparticles.

Non-contact Mode

In non-contact mode, the cantilever vibrates near the surface without touching it. It detects attractive van der Waals forces, offering the least invasive method for delicate or loosely bound surface features.

Other advanced Modes

In addition to the former, there are advanced AFM modes worth mentioning, such as PeakForce QNM®, KPFM, and TUNA.

  • PeakForce QNM®: Measures mechanical properties (modulus, adhesion, deformation) at <1 nN forces with nanometric resolution.
  • Kelvin Probe Force Microscopy (KPFM): Maps electrostatic surface potential and work function.
  • TUNA/CAFM: Enables current mapping for electrical conductivity in semiconductors and nanomaterials.

These advanced modes enable multi-parameter surface mapping in a single scan, drastically improving data acquisition and analysis capabilities.

Applications of Atomic Force Microscopy by industry

Materials Science and Nanotechnology

AFM is pivotal in analyzing nanostructured materials, thin films, composites, and coatings. It provides:

  • High-resolution topographic maps.
  • Mechanical characterization (Young’s modulus, hardness, adhesion).
  • Analysis of wear and deformation under mechanical stress.

This information helps design advanced materials with tailored surface properties for aerospace, electronics, and energy applications.

Biomedical and Biosanitary applications

In biomedical research, AFM reveals cellular structures, measures membrane stiffness, and observes molecular binding forces in real-time. It is used to:

  • Differentiate between healthy and cancerous cells based on viscoelastic properties.
  • Study protein aggregation and receptor-ligand binding.
  • Investigate bacterial adhesion and extracellular matrix mechanics.

The ability of AFM to function in liquid environments is crucial for maintaining live cell conditions during measurements.

Semiconductor and Electronics

AFM is indispensable for analyzing surface defects, roughness, and conductive pathways at the nanometer level in integrated circuits (ICs), MEMS devices, and photovoltaic materials. Modes like KPFM and TUNA are used to:

  • Measure nanoscale electrical conductivity.
  • Characterize dielectric breakdown.
  • Map doping profiles.

Environmental and Surface Chemistry

AFM is increasingly applied to study microplastics, nanotoxicology, and pollutant detection in air, soil, and water. It is used to:

  • Visualize particle morphology.
  • Measure surface energy and adhesion.
  • Detect chemical functional groups with techniques like CFM and AFM-IR.

Comparative analysis: AFM vs. other microscopy and measurement techniques

TechniqueKey StrengthsLimitations
AFMNanoscale topography, mechanical & electrical analysis in ambient conditionsSlower scan speed, limited subsurface analysis
SEMHigh-resolution imaging of conductive materialsRequires vacuum and coating, limited for biological samples
TEMAtomic resolution, internal structure imagingExpensive, complex sample preparation
NanoindentationQuantitative mechanical propertiesLacks spatial resolution of AFM
Optical ProfilometryFast, non-contact surface mappingPoor vertical resolution below 100 nm

AFM stands out due to its versatility and resolution, especially when used for multi-modal surface characterization.

Challenges and barriers to adoption of AFM

Despite its advantages, AFM adoption faces several challenges:

  • High equipment costs: Advanced AFM systems are expensive, making them inaccessible for routine labs.
  • Complexity: Requires expert operators to run the system and interpret data.
  • Scanning time: Slower than optical or SEM techniques, especially for large areas.
  • Sample preparation: Soft or uneven samples may deform under probe interaction.
  • Data volume: Generates massive datasets that require sophisticated analysis tools.

Ongoing improvements in automation, software, and user interface design aim to lower these barriers and broaden AFM accessibility. More importantly, the use of expert personnel and speciallized facilities overcomes most of these drawbacks. To learn more, visit Unit 16 of NANBIOSIS: Surface Characterisation and Bacterial Colonization Unit.

Future trends and innovations in AFM

High-Speed AFM and automation

Emerging high-speed AFMs reduce scan times significantly, enabling near real-time visualization of dynamic biological and chemical processes. AI-powered analysis accelerates interpretation and enhances reproducibility.

AFM for Drug Delivery and molecular manipulation

AFM enables single-molecule force spectroscopy, critical in understanding drug-target interactions. In future applications, AFM-integrated tools could guide surgeries, diagnose diseases at the nanoscale, or evaluate drug responses in real time.

Integration with robotics and quantum research

Miniaturized AFM probes embedded in surgical instruments or autonomous robots could perform in vivo diagnostics. In quantum and nanoelectronics, AFM could help design next-generation devices with atomic precision.

Future enhancements may include:

  • AFM-endoscopy for cancer detection
  • AI-assisted materials discovery
  • Autonomous environmental nanosensors
  • Nanoassembly using functionalized probes

The adaptability of this technique makes it an ideal platform for multidisciplinary innovation.

Conclusion

Atomic Force Microscopy has evolved from a niche research tool to a multi-functional powerhouse in nanotechnology, biomedicine, electronics, and environmental science. With the ability to deliver atomic-scale resolution, multi-modal characterization, and operation under diverse conditions, AFM is shaping the future of materials research and nanoscale innovation.

Despite technical and financial barriers, ongoing developments in probe technology, high-speed scanning, and AI integration are making AFM more accessible and efficient than ever. From studying living cells to engineering quantum devices, AFM is, and will remain, one of the most transformative tools in modern science.

Credits:
Margarita Hierro Oliva
Gabriel Alfranca

What is NANBIOSIS?

The goal of NANBIOSIS is to provide comprehensive and integrated advanced solutions for companies and research institutions in biomedical applications. All of this is done through a single-entry point, involving the design and production of biomaterials, nanomaterials, and their nanoconjugates. This includes their characterization from physical-chemical, functional, toxicological, and biological perspectives (preclinical validation).

Leading scientists

The main value of NANBIOSIS is our highly qualified and experienced academic scientists, working in public institutions, renowned universities and other research institutes.

Custom solutions

Designed for either scientific collaboration or the private industry, we adapt our services to your needs, filling the gaps and paving the way towards the next breakthrough.

Cutting-Edge facilities

Publicly funded, with the most advanced equipment, offering a wide variety of services from synthesis of nanoparticles and medical devices, including up to preclinical trials.

Standards of quality

Our services have standards of quality required in the pharmaceutical, biotech and medtech sectors, from Good Practices to ISO certifications.

In order to access our Cutting-Edge Biomedical Solutions with priority access, enter our Competitive Call here.

NANBIOSIS has worked with pharmaceutical companies of all sizes in the areas of drug delivery, biomaterials and regenerative medicine. Here are a few of them:

Read More

HPLC: What It Is, How It Works, and Its Applications in Modern Biotech

Discover what HPLC is, how it works, and why it’s essential in analytical chemistry and biotechnology. Learn about real applications like LC/MSD iQ integration for antibody purification.

What is HPLC? Understanding High-Performance Liquid Chromatography

High-Performance Liquid Chromatography (HPLC) is one of the most powerful analytical techniques used in chemistry, biochemistry, and biotechnology. From pharmaceutical quality control to the purification of cutting-edge biotechnological products, HPLC provides high-resolution separation and precise quantification of complex mixtures. Its precision, sensitivity, and versatility have made it indispensable in both research and industrial settings.

This article explores how HPLC works, its key components, real-world applications —including the integration of mass detectors like the Agilent LC/MSD iQ— and how this technique is evolving toward automation and AI-enhanced scalability.

How does HPLC work? Core principles and mechanism

At its core, HPLC is a technique for separating, identifying, and quantifying the components of a mixture by exploiting their interaction with a stationary phase and a liquid mobile phase under high pressure.

Mobile and stationary phases

The mobile phase is a liquid solvent or a mixture of solvents that carries the sample through the system. The stationary phase is typically a column packed with small, porous particles (often silica-based) that interact differently with each compound.

As the mobile phase flows under high pressure through the stationary phase, each component in the sample moves at a different rate depending on its chemical characteristics and interaction with the column material.

Retention time and elution

Every compound elutes from the column at a different retention time. This is a key indicator used to identify and quantify substances. The sharper and more distinct the elution peaks, the more effective the separation.

Types of HPLC

HPLC can be tailored to different applications through various modes:

  • Isocratic Elution: A constant mobile phase composition throughout the run.
  • Gradient Elution: Varies the composition of the mobile phase to improve separation of complex mixtures.
  • Reverse-Phase HPLC (RP-HPLC): The most common form, using a nonpolar stationary phase and polar mobile phase.
  • Normal-Phase HPLC, Ion-Exchange HPLC, and Size-Exclusion HPLC are also used based on the molecular properties of the analytes.

Key components of an HPLC system

Understanding each part of the system is essential for appreciating its versatility and precision, as well as to help understanding how it can benefit from the analytical potential of this technique.

1. Solvent delivery system (Pump)

The pump delivers the mobile phase through the column at a precise and constant flow rate, often between 0.5 to 1.5 mL/min, under pressures of up to 6000 psi.

2. Injector and sample introduction

The injector introduces the sample into the mobile phase. Manual or autosampler injectors are used depending on the system’s automation level. This provides the column with a mixture of the sample and the mobile phase.

3. Column: The Heart of HPLC

This is where the separation happens. Columns vary in length, diameter, and particle size depending on the application. Different types of columns can be used depending on the nature of the sample. Reverse-phase C18 columns are the most widely used in pharmaceutical and biotech labs.

4. Detectors: UV vs Mass Spectrometry (MS)

Traditional systems use UV-Vis detectors to measure absorbance. However, newer systems incorporate Mass Spectrometry (LC-MS) for enhanced specificity. Mass detectors can identify compounds based on molecular weight, offering far superior sensitivity and selectivity.

HPLC vs LC-MS: Enhanced analytical power

Combining HPLC with Mass Spectrometry (LC-MS) brings unmatched analytical power, especially when dealing with complex biological samples. This is thanks to their superior analytical capabilities compared to traditional detection approaches.

The role of LC/MSD iQ integration

At NANBIOSIS Unit 2 (CAbS), researchers have integrated the Agilent G6160A LC/MSD iQ mass selective detector with the Agilent 1260 HPLC system to significantly enhance immunoreagent analysis.

This configuration enables:

  • Specific molecular mass detection
  • Rapid confirmation of compound identity
  • Higher selectivity than UV detectors, even for overlapping peaks
  • Improved purification protocols

Advantages over traditional UV detection

Traditional UV detectors may struggle with closely eluting or co-eluting compounds, especially in bioanalytical samples. LC-MS eliminates this by providing a mass fingerprint for each analyte, ensuring better resolution and reducing false positives.

Real Case: Immunoreagent characterization

NANBIOSIS experts at Unit 2 (Custom Antibody Service) use LC/MSD iQ for:

  • Monitoring the purity of antibodies
  • Quantifying specific immunoreagents
  • Characterizing molecular forms for regulatory compliance

This setup supports biotech development pipelines and technology transfer from lab to industry, highlighting the practical utility of this cutting-edge analytical technique.

Applications of HPLC in science and the industry

HPLC is essential across multiple fields where chemical precision is non-negotiable. A few examples are listed herein.

Pharmaceutical Analysis and Quality Control

  • Identification and quantification of active pharmaceutical ingredients (APIs)
  • Stability testing and degradation analysis
  • Regulatory compliance (FDA, EMA)

Biotechnology and Biologics Purification

  • Purification of monoclonal antibodies, peptides, and recombinant proteins
  • Analytical development for biosimilars and biobetters
  • Batch release testing in biomanufacturing

Environmental and Food Safety Testing

  • Detection of contaminants, pesticides, or drug residues
  • Analysis of food additives, vitamins, and preservatives
  • Monitoring of water quality and industrial effluents

Advantages and limitations of HPLC

Strengths

  • High precision and reproducibility
  • Exceptional resolution of complex mixtures
  • Compatibility with a wide range of detectors and samples
  • Scalable from analytical to preparative scales

Limitations

  • High equipment and maintenance cost
  • Requirement of trained personnel
  • Complex method development
  • Solvent usage and disposal issues

These limitations, however, are mitigated in advanced laboratories through automation, SOPs, and proper training protocols. This is where NANBIOSIS Unit 2 can help you overcome these hurdles.

Future of HPLC: Innovation and automation

There are a few ground-breaking technologies that can potentially revolutionize many analyticial techniques, and HPLC is no exception. The integration of AI, robotics, and cloud-based systems is redefining what HPLC can do.

AI-integrated HPLC platforms

Future systems could incorporate real-time predictive analytics, optimizing flow rates, gradients, and detection settings for maximum efficiency.

Large-scale applications and process control

With sufficient investment, platforms like Agilent LC/MSD iQ can be scaled for industrial-level purification, maintaining accuracy without manual intervention.

Vision from CAbS: NANBIOSIS Expertise

In a scenario with unlimited funding, the team at NANBIOSIS Unit 2 envisions:

  • A fully integrated LC/MS-AI platform
  • Real-time monitoring and adaptive process control
  • Seamless tech transfer from lab to industrial production
  • Global-scale immunoreagent production with full traceability

This would elevate the role of HPLC from an analytical tool to a core component of industrial bioprocessing infrastructure.

Conclusion: Why HPLC remains indispensable in Analytical Chemistry

Despite the emergence of newer techniques, HPLC remains the gold standard for separation science. Its adaptability —especially when combined with mass spectrometry— ensures its place in the future of biotech, pharma, and beyond.

Whether you’re developing life-saving biologics, ensuring water safety, or refining analytical workflows, HPLC continues to deliver unmatched resolution, reliability, and reproducibility.

Credits:
Nuria Pascual
Gabriel Alfranca

What is NANBIOSIS?

The goal of NANBIOSIS is to provide comprehensive and integrated advanced solutions for companies and research institutions in biomedical applications. All of this is done through a single-entry point, involving the design and production of biomaterials, nanomaterials, and their nanoconjugates. This includes their characterization from physical-chemical, functional, toxicological, and biological perspectives (preclinical validation).

Leading scientists

The main value of NANBIOSIS is our highly qualified and experienced academic scientists, working in public institutions, renowned universities and other research institutes.

Custom solutions

Designed for either scientific collaboration or the private industry, we adapt our services to your needs, filling the gaps and paving the way towards the next breakthrough.

Cutting-Edge facilities

Publicly funded, with the most advanced equipment, offering a wide variety of services from synthesis of nanoparticles and medical devices, including up to preclinical trials.

Standards of quality

Our services have standards of quality required in the pharmaceutical, biotech and medtech sectors, from Good Practices to ISO certifications.

In order to access our Cutting-Edge Biomedical Solutions with priority access, enter our Competitive Call here.

NANBIOSIS has worked with pharmaceutical companies of all sizes in the areas of drug delivery, biomaterials and regenerative medicine. Here are a few of them:

Read More